Once you complete a cycle count it must be committed.  Inventory quantities are not updated until the Cycle Count is Committed.  

To Committ the Cycle Count, you will navigate to Warehouse>Cycle Counting>Cycle Count Management>All.  From here you will select the check boxes next to the Cycle Counts that you would like to Committ and click the "Committ" button.  

Select Cycle count.JPG

You will then be able to view the counts and edit the found QTY.  Click "Committ" to committ the values to inventory.

View Counts.JPG